Project Status: Active – The project has reached a stable, usable state and is being actively developed.

Overview

scRUtils provides various utilities for visualising and functional analysis of RNA-seq data, particularly single-cell dataset. It evolved from a collection of helper functions that were used in our in-house scRNA-seq processing workflow.

Installation

The package is current available only on GitHub.

devtools::install_github("ycl6/scRUtils")

Load packages

To use scRUtils in a R session, load it using the library() command.

library(scRUtils)

Usage

The documentation of this package is divided into 5 sections:

  1. Introduction to scRUtils
  2. General data visualisations
  3. Single-cell visualisations
  4. Markers and DEGs
  5. Demo datasets